PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 496306
Common NameARALYDRAFT_496306
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C2H2
Protein Properties Length: 299aa    MW: 33186.6 Da    PI: 5.3019
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
496306genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.40.000111031223
             EETTTTEEESSHHHHHHHHHHT CS
  zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
             +C++C++sFs+   L  H+r H
   496306 10 TCQICKRSFSNGKALGGHMRAH 31
             6*******************98 PP

2zf-C2H211.80.00074268290123
              EEETTTTEEESSHHHHHHHHHHT CS
  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
              y+C++C+++F +   L  H + H
   496306 268 YECQICNRVFASGQALGGHKKIH 290
              99**********99999999988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.4931IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.055936IPR007087Zinc finger, C2H2
SuperFamilySSF576674.92E-51034No hitNo description
PROSITE patternPS0002801131IPR007087Zinc finger, C2H2
PfamPF139121.5E-71132IPR007087Zinc finger, C2H2
SuperFamilySSF576678.65E-7222290No hitNo description
SMARTSM003550.28222244IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.598222249IPR007087Zinc finger, C2H2
PfamPF139122.9E-9222245IPR007087Zinc finger, C2H2
PROSITE patternPS000280224244IPR007087Zinc finger, C2H2
SMARTSM003550.029268290IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.492268290IPR007087Zinc finger, C2H2
PfamPF139124.9E-11268291IPR007087Zinc finger, C2H2
PROSITE patternPS000280270290IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MYSLLKATKT CQICKRSFSN GKALGGHMRA HTRKLSAGSS SSTGSVTPSL RPCNNLGASF  60
RPPETVLVRS VHTSEVVGGP KPDLNTEGEQ QITAKRKIVV VDLEEEDSTE SESDITIEES  120
ALCLLKMKSD PTEYFQNPKS IDSLVSTRKK KDTEKHIVID SDDEYVAEDE DEDEDDEDED  180
IKFLTSDMGD LTGDSDEDED DYDDENAYYG GKERRGKKQS KYTCDICGQV LHSYQALGGH  240
RTSHRNKRLK ISDKNHSAED GPVVRRSYEC QICNRVFASG QALGGHKKIH YTFHAPPK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0168870.0AB016887.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MCI2.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002864733.10.0hypothetical protein ARALYDRAFT_496306
TrEMBLD7MV230.0D7MV23_ARALL; Putative uncharacterized protein
STRINGfgenesh2_kg.8__2122__AT5G61470.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM141711523
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61470.11e-112C2H2-like zinc finger protein